Intended for use within the function tax_model
cor_test(formula, data, ...)a formula in form y ~ x
dataframe
passed to cor.test
data("shao19")
ps <- shao19 %>%
ps_filter(family_role == "mother") %>%
tax_filter(min_prevalence = 20) %>%
tax_agg("family")
cors <- ps %>% tax_model(
rank = "family", variables = list("age", "number_reads"), type = cor_test
)
#> Warning: 25 / 174 values are NA in age
#> Modelling: Enterobacteriaceae
#> Modelling: Bacteroidaceae
#> Modelling: Oscillospiraceae
#> Modelling: Clostridia class
#> Modelling: Bifidobacteriaceae
#> Modelling: Enterococcaceae
#> Modelling: Coriobacteriaceae
#> Modelling: Rikenellaceae
#> Modelling: Lachnospiraceae
#> Modelling: Firmicutes phylum
#> Modelling: Barnesiellaceae
#> Modelling: Clostridiaceae
#> Modelling: Peptostreptococcaceae
#> Modelling: Tannerellaceae
#> Modelling: Victivallaceae
#> Modelling: Eubacteriaceae
#> Modelling: Streptococcaceae
#> Modelling: Turicibacteraceae
#> Modelling: Eggerthellaceae
#> Modelling: Veillonellaceae
#> Modelling: Odoribacteraceae
#> Modelling: Eubacteriales order
#> Modelling: Desulfovibrionaceae
#> Modelling: Erysipelotrichaceae
#> Modelling: Micrococcaceae
#> Modelling: Pasteurellaceae
#> Modelling: Acidaminococcaceae
#> Modelling: Akkermansiaceae
#> Modelling: Sutterellaceae
#> Modelling: Actinomycetaceae
#> Modelling: Atopobiaceae
#> Modelling: Prevotellaceae
#> Modelling: Lactobacillaceae
#> Modelling: Proteobacteria phylum
#> Modelling: Coprobacillaceae
#> Modelling: Methanobacteriaceae
tax_models_get(cors)
#> $family
#> $family$age
#> $family$age$Enterobacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Enterobacteriaceae and age
#> t = 1.8356, df = 147, p-value = 0.06844
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.01138293 0.30319302
#> sample estimates:
#> cor
#> 0.149691
#>
#>
#> $family$age$Bacteroidaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Bacteroidaceae and age
#> t = -0.52811, df = 147, p-value = 0.5982
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.2028969 0.1181097
#> sample estimates:
#> cor
#> -0.04351673
#>
#>
#> $family$age$Oscillospiraceae
#>
#> Pearson's product-moment correlation
#>
#> data: Oscillospiraceae and age
#> t = 0.7232, df = 147, p-value = 0.4707
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1022361 0.2182530
#> sample estimates:
#> cor
#> 0.05954271
#>
#>
#> $family$age$`Clostridia class`
#>
#> Pearson's product-moment correlation
#>
#> data: Clostridia class and age
#> t = 1.5391, df = 147, p-value = 0.1259
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.03559243 0.28103740
#> sample estimates:
#> cor
#> 0.1259282
#>
#>
#> $family$age$Bifidobacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Bifidobacteriaceae and age
#> t = -1.9549, df = 147, p-value = 0.05249
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.31199519 0.00166131
#> sample estimates:
#> cor
#> -0.1591812
#>
#>
#> $family$age$Enterococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Enterococcaceae and age
#> t = -0.65662, df = 147, p-value = 0.5125
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.2130252 0.1076585
#> sample estimates:
#> cor
#> -0.0540776
#>
#>
#> $family$age$Coriobacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Coriobacteriaceae and age
#> t = -0.20105, df = 147, p-value = 0.8409
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1769087 0.1446051
#> sample estimates:
#> cor
#> -0.0165804
#>
#>
#> $family$age$Rikenellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Rikenellaceae and age
#> t = -0.96076, df = 147, p-value = 0.3383
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.23678670 0.08285795
#> sample estimates:
#> cor
#> -0.07899449
#>
#>
#> $family$age$Lachnospiraceae
#>
#> Pearson's product-moment correlation
#>
#> data: Lachnospiraceae and age
#> t = -0.00041091, df = 147, p-value = 0.9997
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1608330 0.1607669
#> sample estimates:
#> cor
#> -3.389166e-05
#>
#>
#> $family$age$`Firmicutes phylum`
#>
#> Pearson's product-moment correlation
#>
#> data: Firmicutes phylum and age
#> t = 0.79264, df = 147, p-value = 0.4293
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.09657627 0.22369020
#> sample estimates:
#> cor
#> 0.06523678
#>
#>
#> $family$age$Barnesiellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Barnesiellaceae and age
#> t = -1.2593, df = 147, p-value = 0.2099
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.25979317 0.05846221
#> sample estimates:
#> cor
#> -0.1033089
#>
#>
#> $family$age$Clostridiaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Clostridiaceae and age
#> t = -0.64966, df = 147, p-value = 0.5169
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.2124778 0.1082251
#> sample estimates:
#> cor
#> -0.05350595
#>
#>
#> $family$age$Peptostreptococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Peptostreptococcaceae and age
#> t = -0.53057, df = 147, p-value = 0.5965
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.2030909 0.1179102
#> sample estimates:
#> cor
#> -0.04371863
#>
#>
#> $family$age$Tannerellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Tannerellaceae and age
#> t = 0.29411, df = 147, p-value = 0.7691
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1370841 0.1843315
#> sample estimates:
#> cor
#> 0.02425037
#>
#>
#> $family$age$Victivallaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Victivallaceae and age
#> t = -0.01424, df = 147, p-value = 0.9887
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1619439 0.1596556
#> sample estimates:
#> cor
#> -0.001174489
#>
#>
#> $family$age$Eubacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Eubacteriaceae and age
#> t = 0.051362, df = 147, p-value = 0.9591
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1566705 0.1649238
#> sample estimates:
#> cor
#> 0.004236223
#>
#>
#> $family$age$Streptococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Streptococcaceae and age
#> t = 0.66048, df = 147, p-value = 0.51
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1073443 0.2133286
#> sample estimates:
#> cor
#> 0.05439454
#>
#>
#> $family$age$Turicibacteraceae
#>
#> Pearson's product-moment correlation
#>
#> data: Turicibacteraceae and age
#> t = -1.2697, df = 147, p-value = 0.2062
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.26059201 0.05760825
#> sample estimates:
#> cor
#> -0.1041565
#>
#>
#> $family$age$Eggerthellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Eggerthellaceae and age
#> t = -0.29017, df = 147, p-value = 0.7721
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1840180 0.1374025
#> sample estimates:
#> cor
#> -0.02392605
#>
#>
#> $family$age$Veillonellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Veillonellaceae and age
#> t = -0.70296, df = 147, p-value = 0.4832
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.2166657 0.1038845
#> sample estimates:
#> cor
#> -0.05788232
#>
#>
#> $family$age$Odoribacteraceae
#>
#> Pearson's product-moment correlation
#>
#> data: Odoribacteraceae and age
#> t = 1.3805, df = 147, p-value = 0.1695
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.04855327 0.26903578
#> sample estimates:
#> cor
#> 0.1131299
#>
#>
#> $family$age$`Eubacteriales order`
#>
#> Pearson's product-moment correlation
#>
#> data: Eubacteriales order and age
#> t = -0.73374, df = 147, p-value = 0.4643
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.2190789 0.1013777
#> sample estimates:
#> cor
#> -0.06040694
#>
#>
#> $family$age$Desulfovibrionaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Desulfovibrionaceae and age
#> t = -1.3366, df = 147, p-value = 0.1834
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.26569560 0.05214148
#> sample estimates:
#> cor
#> -0.1095772
#>
#>
#> $family$age$Erysipelotrichaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Erysipelotrichaceae and age
#> t = -1.1646, df = 147, p-value = 0.2461
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.25252969 0.06620559
#> sample estimates:
#> cor
#> -0.09561224
#>
#>
#> $family$age$Micrococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Micrococcaceae and age
#> t = -0.37709, df = 147, p-value = 0.7067
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1909320 0.1303651
#> sample estimates:
#> cor
#> -0.03108649
#>
#>
#> $family$age$Pasteurellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Pasteurellaceae and age
#> t = -0.31094, df = 147, p-value = 0.7563
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.185672 0.135722
#> sample estimates:
#> cor
#> -0.02563745
#>
#>
#> $family$age$Acidaminococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Acidaminococcaceae and age
#> t = -0.035408, df = 147, p-value = 0.9718
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1636435 0.1579537
#> sample estimates:
#> cor
#> -0.002920404
#>
#>
#> $family$age$Akkermansiaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Akkermansiaceae and age
#> t = 1.4961, df = 147, p-value = 0.1368
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.0391025 0.2777969
#> sample estimates:
#> cor
#> 0.1224675
#>
#>
#> $family$age$Sutterellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Sutterellaceae and age
#> t = 1.2978, df = 147, p-value = 0.1964
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.05531393 0.26273607
#> sample estimates:
#> cor
#> 0.1064327
#>
#>
#> $family$age$Actinomycetaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Actinomycetaceae and age
#> t = -0.50115, df = 147, p-value = 0.617
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.2007659 0.1202997
#> sample estimates:
#> cor
#> -0.04129917
#>
#>
#> $family$age$Atopobiaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Atopobiaceae and age
#> t = 0.53467, df = 147, p-value = 0.5937
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1175765 0.2034153
#> sample estimates:
#> cor
#> 0.04405642
#>
#>
#> $family$age$Prevotellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Prevotellaceae and age
#> t = -0.2941, df = 147, p-value = 0.7691
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1843309 0.1370847
#> sample estimates:
#> cor
#> -0.02424975
#>
#>
#> $family$age$Lactobacillaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Lactobacillaceae and age
#> t = -0.90507, df = 147, p-value = 0.3669
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.23245882 0.08740476
#> sample estimates:
#> cor
#> -0.07444144
#>
#>
#> $family$age$`Proteobacteria phylum`
#>
#> Pearson's product-moment correlation
#>
#> data: Proteobacteria phylum and age
#> t = -1.8453, df = 147, p-value = 0.06701
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.30390957 0.01059375
#> sample estimates:
#> cor
#> -0.1504625
#>
#>
#> $family$age$Coprobacillaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Coprobacillaceae and age
#> t = -0.96553, df = 147, p-value = 0.3359
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.23715727 0.08246802
#> sample estimates:
#> cor
#> -0.07938464
#>
#>
#> $family$age$Methanobacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Methanobacteriaceae and age
#> t = 0.077097, df = 147, p-value = 0.9387
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1545993 0.1669879
#> sample estimates:
#> cor
#> 0.006358728
#>
#>
#>
#> $family$number_reads
#> $family$number_reads$Enterobacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Enterobacteriaceae and number_reads
#> t = -0.74985, df = 172, p-value = 0.4544
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.20411874 0.09247282
#> sample estimates:
#> cor
#> -0.05708231
#>
#>
#> $family$number_reads$Bacteroidaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Bacteroidaceae and number_reads
#> t = 12.47, df = 172, p-value < 2.2e-16
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.6020160 0.7599377
#> sample estimates:
#> cor
#> 0.6890713
#>
#>
#> $family$number_reads$Oscillospiraceae
#>
#> Pearson's product-moment correlation
#>
#> data: Oscillospiraceae and number_reads
#> t = 9.3364, df = 172, p-value < 2.2e-16
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.4718928 0.6708389
#> sample estimates:
#> cor
#> 0.5799483
#>
#>
#> $family$number_reads$`Clostridia class`
#>
#> Pearson's product-moment correlation
#>
#> data: Clostridia class and number_reads
#> t = 3.7383, df = 172, p-value = 0.000252
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.1306848 0.4063244
#> sample estimates:
#> cor
#> 0.2741251
#>
#>
#> $family$number_reads$Bifidobacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Bifidobacteriaceae and number_reads
#> t = 3.6366, df = 172, p-value = 0.0003649
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.1233364 0.4000697
#> sample estimates:
#> cor
#> 0.2672034
#>
#>
#> $family$number_reads$Enterococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Enterococcaceae and number_reads
#> t = -0.70111, df = 172, p-value = 0.4842
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.20056021 0.09615026
#> sample estimates:
#> cor
#> -0.05338318
#>
#>
#> $family$number_reads$Coriobacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Coriobacteriaceae and number_reads
#> t = 1.8851, df = 172, p-value = 0.0611
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.006634549 0.285012872
#> sample estimates:
#> cor
#> 0.1422757
#>
#>
#> $family$number_reads$Rikenellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Rikenellaceae and number_reads
#> t = 8.2469, df = 172, p-value = 4.044e-14
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.4165395 0.6311120
#> sample estimates:
#> cor
#> 0.5323222
#>
#>
#> $family$number_reads$Lachnospiraceae
#>
#> Pearson's product-moment correlation
#>
#> data: Lachnospiraceae and number_reads
#> t = 6.3964, df = 172, p-value = 1.451e-09
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.3097988 0.5511887
#> sample estimates:
#> cor
#> 0.4383649
#>
#>
#> $family$number_reads$`Firmicutes phylum`
#>
#> Pearson's product-moment correlation
#>
#> data: Firmicutes phylum and number_reads
#> t = 1.8893, df = 172, p-value = 0.06054
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.006321532 0.285300448
#> sample estimates:
#> cor
#> 0.1425824
#>
#>
#> $family$number_reads$Barnesiellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Barnesiellaceae and number_reads
#> t = 3.5789, df = 172, p-value = 0.0004485
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.1191617 0.3965049
#> sample estimates:
#> cor
#> 0.2632645
#>
#>
#> $family$number_reads$Clostridiaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Clostridiaceae and number_reads
#> t = 3.2392, df = 172, p-value = 0.001439
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.09437574 0.37516597
#> sample estimates:
#> cor
#> 0.239779
#>
#>
#> $family$number_reads$Peptostreptococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Peptostreptococcaceae and number_reads
#> t = 1.7873, df = 172, p-value = 0.07565
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.01401751 0.27821471
#> sample estimates:
#> cor
#> 0.1350339
#>
#>
#> $family$number_reads$Tannerellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Tannerellaceae and number_reads
#> t = 2.2396, df = 172, p-value = 0.0264
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.02006385 0.30935403
#> sample estimates:
#> cor
#> 0.1683312
#>
#>
#> $family$number_reads$Victivallaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Victivallaceae and number_reads
#> t = 2.0114, df = 172, p-value = 0.04584
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.002890989 0.293740766
#> sample estimates:
#> cor
#> 0.1515956
#>
#>
#> $family$number_reads$Eubacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Eubacteriaceae and number_reads
#> t = 3.6418, df = 172, p-value = 0.000358
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.1237170 0.4003943
#> sample estimates:
#> cor
#> 0.2675623
#>
#>
#> $family$number_reads$Streptococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Streptococcaceae and number_reads
#> t = 0.44949, df = 172, p-value = 0.6536
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1151034 0.1820949
#> sample estimates:
#> cor
#> 0.03425301
#>
#>
#> $family$number_reads$Turicibacteraceae
#>
#> Pearson's product-moment correlation
#>
#> data: Turicibacteraceae and number_reads
#> t = -0.40283, df = 172, p-value = 0.6876
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1786551 0.1186103
#> sample estimates:
#> cor
#> -0.03070127
#>
#>
#> $family$number_reads$Eggerthellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Eggerthellaceae and number_reads
#> t = 2.6811, df = 172, p-value = 0.008052
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.05310387 0.33896106
#> sample estimates:
#> cor
#> 0.2002914
#>
#>
#> $family$number_reads$Veillonellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Veillonellaceae and number_reads
#> t = -0.027574, df = 172, p-value = 0.978
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1508252 0.1467132
#> sample estimates:
#> cor
#> -0.002102528
#>
#>
#> $family$number_reads$Odoribacteraceae
#>
#> Pearson's product-moment correlation
#>
#> data: Odoribacteraceae and number_reads
#> t = 7.6079, df = 172, p-value = 1.747e-12
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.3814894 0.6053608
#> sample estimates:
#> cor
#> 0.5017811
#>
#>
#> $family$number_reads$`Eubacteriales order`
#>
#> Pearson's product-moment correlation
#>
#> data: Eubacteriales order and number_reads
#> t = 1.527, df = 172, p-value = 0.1286
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.03370026 0.25994681
#> sample estimates:
#> cor
#> 0.1156494
#>
#>
#> $family$number_reads$Desulfovibrionaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Desulfovibrionaceae and number_reads
#> t = 2.8757, df = 172, p-value = 0.004542
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.06756108 0.35174043
#> sample estimates:
#> cor
#> 0.2141782
#>
#>
#> $family$number_reads$Erysipelotrichaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Erysipelotrichaceae and number_reads
#> t = 0.16333, df = 172, p-value = 0.8705
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1365703 0.1609242
#> sample estimates:
#> cor
#> 0.0124525
#>
#>
#> $family$number_reads$Micrococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Micrococcaceae and number_reads
#> t = 4.2731, df = 172, p-value = 3.186e-05
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.1688003 0.4383575
#> sample estimates:
#> cor
#> 0.3097905
#>
#>
#> $family$number_reads$Pasteurellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Pasteurellaceae and number_reads
#> t = 2.2194, df = 172, p-value = 0.02777
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.01854693 0.30798113
#> sample estimates:
#> cor
#> 0.1668564
#>
#>
#> $family$number_reads$Acidaminococcaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Acidaminococcaceae and number_reads
#> t = 4.6875, df = 172, p-value = 5.605e-06
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.1976940 0.4621927
#> sample estimates:
#> cor
#> 0.3365652
#>
#>
#> $family$number_reads$Akkermansiaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Akkermansiaceae and number_reads
#> t = 1.6533, df = 172, p-value = 0.1001
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.02414786 0.26883889
#> sample estimates:
#> cor
#> 0.1250713
#>
#>
#> $family$number_reads$Sutterellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Sutterellaceae and number_reads
#> t = 5.9824, df = 172, p-value = 1.242e-08
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.2837629 0.5309981
#> sample estimates:
#> cor
#> 0.4150128
#>
#>
#> $family$number_reads$Actinomycetaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Actinomycetaceae and number_reads
#> t = 1.2116, df = 172, p-value = 0.2273
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.05756938 0.23750782
#> sample estimates:
#> cor
#> 0.0919883
#>
#>
#> $family$number_reads$Atopobiaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Atopobiaceae and number_reads
#> t = 0.11847, df = 172, p-value = 0.9058
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1399253 0.1575907
#> sample estimates:
#> cor
#> 0.009032607
#>
#>
#> $family$number_reads$Prevotellaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Prevotellaceae and number_reads
#> t = 0.45974, df = 172, p-value = 0.6463
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1143326 0.1828499
#> sample estimates:
#> cor
#> 0.03503307
#>
#>
#> $family$number_reads$Lactobacillaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Lactobacillaceae and number_reads
#> t = 1.6286, df = 172, p-value = 0.1052
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.02601643 0.26710340
#> sample estimates:
#> cor
#> 0.1232304
#>
#>
#> $family$number_reads$`Proteobacteria phylum`
#>
#> Pearson's product-moment correlation
#>
#> data: Proteobacteria phylum and number_reads
#> t = -0.14429, df = 172, p-value = 0.8854
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1595100 0.1379945
#> sample estimates:
#> cor
#> -0.01100118
#>
#>
#> $family$number_reads$Coprobacillaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Coprobacillaceae and number_reads
#> t = 0.16346, df = 172, p-value = 0.8703
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> -0.1365604 0.1609340
#> sample estimates:
#> cor
#> 0.0124626
#>
#>
#> $family$number_reads$Methanobacteriaceae
#>
#> Pearson's product-moment correlation
#>
#> data: Methanobacteriaceae and number_reads
#> t = 3.231, df = 172, p-value = 0.001478
#> alternative hypothesis: true correlation is not equal to 0
#> 95 percent confidence interval:
#> 0.09377651 0.37464637
#> sample estimates:
#> cor
#> 0.2392091
#>
#>
#>
#>