Define psExtra class S4 object

Define psExtra class S4 object

Slots

info

list.

counts

otu_table.

dist

dist.

ord

ANY.

permanova

ANY.

bdisp

ANY.

taxatree_models

list.

taxatree_stats

data.frame.

tax_models

list.

tax_stats

data.frame.

Examples

library(phyloseq)
data("shao19")

ps <- shao19 %>% ps_filter(infant_age == 12)
ps %>% tax_agg("genus")
#> psExtra object - a phyloseq object with extra slots:
#> 
#> phyloseq-class experiment-level object
#> otu_table()   OTU Table:         [ 38 taxa and 8 samples ]
#> sample_data() Sample Data:       [ 8 samples by 11 sample variables ]
#> tax_table()   Taxonomy Table:    [ 38 taxa by 5 taxonomic ranks ]
#> 
#> psExtra info:
#> tax_agg = "genus"